Python Module Index

a | d | e | k | m | p | s | t | u


	a
	`prody.apps`
	`prody.apps.evol_apps.evol_coevol`
	`prody.apps.evol_apps.evol_conserv`
	`prody.apps.evol_apps.evol_fetch`
	`prody.apps.evol_apps.evol_filter`
	`prody.apps.evol_apps.evol_merge`
	`prody.apps.evol_apps.evol_occupancy`
	`prody.apps.evol_apps.evol_rankorder`
	`prody.apps.evol_apps.evol_refine`
	`prody.apps.evol_apps.evol_search`
	`prody.apps.prody_apps.prody_align`
	`prody.apps.prody_apps.prody_anm`
	`prody.apps.prody_apps.prody_biomol`
	`prody.apps.prody_apps.prody_blast`
	`prody.apps.prody_apps.prody_catdcd`
	`prody.apps.prody_apps.prody_contacts`
	`prody.apps.prody_apps.prody_fetch`
	`prody.apps.prody_apps.prody_gnm`
	`prody.apps.prody_apps.prody_pca`
	`prody.apps.prody_apps.prody_select`
	`prody.atomic`
	`prody.atomic.atom`
	`prody.atomic.atomgroup`
	`prody.atomic.atomic`
	`prody.atomic.atommap`
	`prody.atomic.bond`
	`prody.atomic.chain`
	`prody.atomic.fields`
	`prody.atomic.flags`
	`prody.atomic.functions`
	`prody.atomic.hierview`
	`prody.atomic.pointer`
	`prody.atomic.residue`
	`prody.atomic.segment`
	`prody.atomic.select`
	`prody.atomic.selection`
	`prody.atomic.subset`

	d
	`prody.database`
	`prody.database.pfam`
	`prody.dynamics`
	`prody.dynamics.analysis`
	`prody.dynamics.anm`
	`prody.dynamics.compare`
	`prody.dynamics.editing`
	`prody.dynamics.functions`
	`prody.dynamics.gamma`
	`prody.dynamics.gnm`
	`prody.dynamics.heatmapper`
	`prody.dynamics.mode`
	`prody.dynamics.modeset`
	`prody.dynamics.nma`
	`prody.dynamics.nmdfile`
	`prody.dynamics.pca`
	`prody.dynamics.plotting`
	`prody.dynamics.rtb`
	`prody.dynamics.sampling`

	e
	`prody.ensemble`
	`prody.ensemble.conformation`
	`prody.ensemble.ensemble`
	`prody.ensemble.functions`
	`prody.ensemble.pdbensemble`

	k
	`prody.kdtree`
	`prody.kdtree.kdtree`

	m
	`prody.measure`
	`prody.measure.contacts`
	`prody.measure.measure`
	`prody.measure.transform`

	p
	`prody`
	`prody.proteins`
	`prody.proteins.blastpdb`
	`prody.proteins.compare`
	`prody.proteins.dssp`
	`prody.proteins.functions`
	`prody.proteins.header`
	`prody.proteins.localpdb`
	`prody.proteins.pdbclusters`
	`prody.proteins.pdbfile`
	`prody.proteins.pdbligands`
	`prody.proteins.stride`
	`prody.proteins.wwpdb`

	s
	`prody.sequence`
	`prody.sequence.analysis`
	`prody.sequence.msa`
	`prody.sequence.msafile`
	`prody.sequence.plotting`
	`prody.sequence.sequence`

	t
	`prody.trajectory`
	`prody.trajectory.dcdfile`
	`prody.trajectory.frame`
	`prody.trajectory.psffile`
	`prody.trajectory.trajbase`
	`prody.trajectory.trajectory`
	`prody.trajectory.trajfile`

	u
	`prody.utilities`
	`prody.utilities.checkers`
	`prody.utilities.doctools`
	`prody.utilities.logger`
	`prody.utilities.misctools`
	`prody.utilities.pathtools`
	`prody.utilities.settings`