Pfam MSA Fetcher
Pfam MSA download application.
-
evol_fetch(acc, **kwargs)[source]
Fetch MSA files from Pfam.
Parameters: | acc (str) – Pfam accession or ID |
Download Options
Parameters: |
- alignment (str) – alignment type, one of 'full', 'seed',
'ncbi', 'metagenomics', default is 'full'
- format (str) – Pfam supported MSA format, one of 'selex',
'fasta', 'stockholm', default is 'selex'
- order (str) – ordering of sequences, one of 'tree',
'alphabetical', default is 'tree'
- inserts (str) – letter case for inserts, one of 'upper',
'lower', default is 'upper'
- gaps (str) – gap character, one of 'dashes', 'dots',
'mixed', default is 'dashes'
- timeout (int) – timeout for blocking connection attempts, default is
60
|
Output Options
Parameters: |
- folder (str) – output directory, default is '.'
- outname (str) – output filename, default is accession and alignment type
- compressed (bool) – gzip downloaded MSA file
|