Pfam Search
Pfam search application.
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evol_search(query, **kwargs)[source]
Search Pfam with given query.
| Parameters: | query – protein UniProt ID or sequence, a PDB identifier, or a
sequence file, where sequence have no gaps and 12 or more
characters |
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Sequence Search Options
| Parameters: |
- search_b (bool) – search Pfam-B families
- skip_a (bool) – do not search Pfam-A families
- ga (bool) – use gathering threshold
- evalue (float) – e-value cutoff, must be less than 10.0
- timeout (int) – timeout in seconds for blocking connection attempt,
default is 60
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Output Options
| Parameters: |
- outname (str) – name for output file, default is standard output
- delimiter (str) – delimiter for output data columns, default is '\t'
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