MSA File Filter
Refine MSA application.
-
evol_filter(msa, *word, **kwargs)[source]
Filter an MSA using sequence labels.
Parameters: |
- msa – MSA filename to be filtered
- word – word to be compared to sequence label
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Filtering Method (Required)
Parameters: |
- startswith (bool) – sequence label starts with given words
- endswith (bool) – sequence label ends with given words
- contains (bool) – sequence label contains with given words
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Filter Option
Parameters: | filter_full (bool) – compare full label with word(s) |
Output Options
Parameters: |
- outname (str) – output filename, default is msa filename with _refined
suffix
- format (str) – output MSA file format, default is same as input
- compressed (bool) – gzip refined MSA output
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