New Features:
- buildDirectInfoMatrix() and calcMeff() are implemented for calculation of direct information from multiple sequence alignments.
- showDirectInfoMatrix() and showSCAMatrix() functions are implemented for displaying coevolutionary data.
- RTB is implemented for Rotations-Translations of Blocks calculations. Optional arguments also permit imANM calculations.
Availability:
- Source is moved from lib/prody to prody.
- Source code will be hosted only at GitHub.
Improvements:
- DCDFile and parseDCD() support DCD files written by cpptraj.
Testing:
- ProDy test command (prody test) and function prody.test() has been removed for easier maintenance of testing functions. See Testing ProDy for more information on how to test ProDy.