Heatmapper Functions
This module defines functions for supporting VMD plugin Heat Mapper
format files.
-
parseHeatmap(heatmap, **kwargs)[source]
Return a two dimensional array and a dictionary with information parsed
from heatmap, which may be an input stream or an .hm file in VMD
plugin Heat Mapper format.
-
writeHeatmap(filename, heatmap, **kwargs)[source]
Return filename that contains heatmap in Heat Mapper .hm
file (extension is automatically added when not found). filename may
also be an output stream.
Parameters: |
- title (str) – title of the heatmap
- xlabel (str) – x-axis lab, default is 'unknown'
- ylabel (str) – y-axis lab, default is 'unknown'
- xorigin (float) – x-axis origin, default is 0
- xstep (float) – x-axis step, default is 1
- min (float) – minimum value, default is minimum in heatmap
- max (float) – maximum value, default is maximum in heatmap
- format (str) – number format, default is '%f'
|
Other keyword arguments that are arrays with length equal to the y-axis
(second dimension of heatmap) will be considered as numbering.
-
showHeatmap(heatmap, *args, **kwargs)[source]
Show heatmap, which can be an two dimensional array or a Heat Mapper
.hm file.
Heatmap is plotted using imshow() function.
Default values passed to this function are interpolation='nearest',
aspect='auto', and origin='lower'.