ProDy 1.5 Series¶

1.5.1 (Dec 24, 2013)
1.5 (Dec 23, 2013)

1.5.1 (Dec 24, 2013)¶

Changes:

PDBBlastRecord become picklable.

1.5 (Dec 23, 2013)¶

New Features:

buildDirectInfoMatrix() and calcMeff() are implemented for calculation of direct information from multiple sequence alignments.

showDirectInfoMatrix() and showSCAMatrix() functions are implemented for displaying coevolutionary data.

RTB is implemented for Rotations-Translations of Blocks calculations. Optional arguments also permit imANM calculations.

Availability:

Source is moved from lib/prody to prody.

Source code will be hosted only at GitHub.

Improvements:

DCDFile and parseDCD() support DCD files written by cpptraj.

Testing:

ProDy test command (prody test) and function prody.test() has been removed for easier maintenance of testing functions. See Testing ProDy for more information on how to test ProDy.